FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004948406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1113078
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC108766497.71678175294095No Hit
CCGCTTAC32010.28758092424789633No Hit
CAGCTAAC29090.2613473628981976No Hit
CAGCTTAA28680.2576638833936166No Hit
CAGCATAC27720.24903915089508552No Hit
AAGCTTAC23160.20807167152706282No Hit
CAGATTAC18270.16413944036267No Hit
CACCTTAC18240.16386991747209093No Hit
CATCTTAC13890.12478909833812186No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)