FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004948410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18429595
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1803926697.8820532952569No Hit
ACTATTAG398710.21634224734726942No Hit
TCAATTAG397050.21544152218212065No Hit
TCTATTAA388810.21097045268764722No Hit
TCTAATAG369200.2003299584174259No Hit
TCTTTTAG359280.19494731164738022No Hit
TCTATTAT244260.13253682460195138No Hit
TCTATAAG239090.129731554057482No Hit
TCTATTTG237790.12902616687995586No Hit
TCTATTAC207490.11258521958838487No Hit
TATATTAG203070.11018690318479597No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)