FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004948412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4764833
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG465733397.74388735135103No Hit
TTAGATTA143070.3002623596671699No Hit
ATAGATTG112950.23704923131618671No Hit
TTAGATTC95250.19990207421750145No Hit
TTAGAATG94320.19795027443774002No Hit
TTACATTG84100.1765014639547703No Hit
TTAGATTT81720.1715065354861335No Hit
TAAGATTG68550.14386653215338294No Hit
TTAGATAG66220.13897653915677632No Hit
TTTGATTG56330.11822030278920584No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)