FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2449200
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG73220.2989547607382002No Hit
GGACACCTGGCTCCTT73130.29858729381022375No Hit
TCGCGGTGAGTCTTGA61600.25151069737056997No Hit
GTTAAGAGAGTACGTT49640.20267842560836188No Hit
CGCTTACTGATCACAC44720.18259023354564757No Hit
TACCAGTGATACGATC42740.17450596113016495No Hit
ATCTTACTGGTTTGGT41210.16825902335456475No Hit
TTGTGGTGAAAGACAT40800.16658500734933857No Hit
ATTCCTAACTGCGTGC39020.15931732810713703No Hit
ATAGATGGAGAGTAAT38440.1569492079046219No Hit
ATATGCCGAGAACAGC38350.15658174097664546No Hit
TGGAACACTTGAGGCA34240.13980075126571942No Hit
GCTATACGACAGGTGA33740.13775926833251675No Hit
CTTTCTGCTCTTGTGA33100.1351461701780173No Hit
CTTGACGCTCAGGGTA32770.13379879144210355No Hit
AGCTCTGCTGGCCTGT32570.1329821982688225No Hit
AGGTAGCGATTGACCA32130.1311856932876041No Hit
GCGGTTCGAAGCAAGC31720.12951167728237792No Hit
ACTGGAACTCTGGAAG30510.12457128858402744No Hit
AGTTCACGACCAGAGA30310.12375469541074635No Hit
TGTGACTGACCGTTAA29860.12191736077086396No Hit
ACCCTTTCTAGGTGAC29470.12032500408296586No Hit
TGTACCCTGCTGAGAG28310.11558876367793565No Hit
ACATGTGTGTCAATGC27290.11142413849420219No Hit
TTCCAAACTCCGCTAG27270.11134247917687409No Hit
ACACTCCACCGTACAT27020.11032173771027273No Hit
TCAGTCCACCCAGCAC26750.1092193369263433No Hit
CACAGCTCTCTCTGGG26460.10803527682508574No Hit
GAACTACTGGCCCTGA25540.10427894822799282No Hit
CAGTGGAGAGATCATC25460.10395231095868039No Hit
TCCCAGACTCCTAACA25160.10272742119875877No Hit
ACGCTCTTGCCTCAAA25000.10207414666013392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)