FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2877492
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA80640.2802440458566001No Hit
GGGGGGGGGGGGGGGG72040.25035690802963134No Hit
GGACACCTGGCTCCTT71660.24903631356750947No Hit
GTTAAGAGAGTACGTT54880.1907216423190751No Hit
CGCTTACTGATCACAC50710.17622985572157976No Hit
TTGTGGTGAAAGACAT47870.16636014974151103No Hit
ATCTTACTGGTTTGGT47860.1663253972556657No Hit
TACCAGTGATACGATC47570.16531757516615164No Hit
ATAGATGGAGAGTAAT46570.16184232658162037No Hit
ATTCCTAACTGCGTGC43890.15252866037507662No Hit
ATATGCCGAGAACAGC42080.14623846043707506No Hit
TGGAACACTTGAGGCA39250.13640350694285164No Hit
GCGGTTCGAAGCAAGC38310.13313677327339227No Hit
CTTGACGCTCAGGGTA38090.13237221858479536No Hit
CTTTCTGCTCTTGTGA37950.131885683782961No Hit
AGCTCTGCTGGCCTGT35980.12503944407143444No Hit
AGGTAGCGATTGACCA34570.12013934356724537No Hit
TGTGACTGACCGTTAA33710.11715062978454849No Hit
GCTATACGACAGGTGA33590.11673359995440474No Hit
AGTTCACGACCAGAGA33550.11659459001102349No Hit
ACTGGAACTCTGGAAG33500.11642082758179693No Hit
ACGCTCTTGCCTCAAA31740.11030439007302192No Hit
TGTACCCTGCTGAGAG31640.1099568652145688No Hit
ACCCTTTCTAGGTGAC31550.10964409284196099No Hit
TTCCAAACTCCGCTAG31240.1085667657807563No Hit
TCCCAGACTCCTAACA30200.1049525072528438No Hit
ACATGTGTGTCAATGC30190.10491775476699848No Hit
TCAGTCCACCCAGCAC30110.10463973488023598No Hit
ACACTCCACCGTACAT30110.10463973488023598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)