FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3130715
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT304725097.33399558886708No Hit
TCACTCCA190660.6089982639748428No Hit
ACACTCCT119080.38036039690613804No Hit
TCACTACT81220.2594295552293965No Hit
TCCCTCCT76610.24470448443885823No Hit
TCACACCT48370.1545014477523505No Hit
TCAATCCT39850.1272872171372993No Hit
TAACTCCT32650.1042892757724673No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)