FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2877492
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA279904797.27384124786445No Hit
ACCGCGAA202710.70446764057033No Hit
AACGCCAA76400.2655089918581876No Hit
AACGCAAA68890.23940987498835792No Hit
AACCCGAA58670.2038928344544485No Hit
AACGAGAA51810.18005262916456413No Hit
AACGCTAA34400.11954855130787505No Hit
AAAGCGAA32340.11238953922374068No Hit
AACGCGAT32250.11207676685113287No Hit
AACTCGAA29510.10255458572951723No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)