FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004948437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18720524
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT1828638797.68095700740001No Hit
AGCTGCGA638800.34122976472239774No Hit
AGCTGCGG506490.27055332425523987No Hit
AGCAGCGT339010.18109001649740145No Hit
CGCTGCGT317570.16963734562130847No Hit
AGCGGCGT277200.14807277830470986No Hit
ACCTGCGT216010.11538672742280077No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)