FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2586487
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNN72840.281617498947414No Hit
TCGCGGTGAGTCTTGA71380.27597277697510175No Hit
GGACACCTGGCTCCTT68470.2647219955097397No Hit
GGGGGGGGGGGGGGGG63400.24512011852369642No Hit
GTTAAGAGAGTACGTT50000.19331239631206343No Hit
CGCTTACTGATCACAC44600.17243465751036058No Hit
TACCAGTGATACGATC43680.1688777094182186No Hit
TTGTGGTGAAAGACAT41390.1600240016671261No Hit
ATTCCTAACTGCGTGC41210.15932807704040267No Hit
ATCTTACTGGTTTGGT41160.15913476464409063No Hit
ATAGATGGAGAGTAAT41110.15894145224777856No Hit
ATATGCCGAGAACAGC39360.15217551837685633No Hit
TGGAACACTTGAGGCA35980.13910760038616085No Hit
GCGGTTCGAAGCAAGC35800.1384116757594374No Hit
CTTTCTGCTCTTGTGA34470.1332695660175365No Hit
AGCTCTGCTGGCCTGT33930.13118179213736622No Hit
CTTGACGCTCAGGGTA33840.13083382982400454No Hit
AGGTAGCGATTGACCA31760.12279203413742268No Hit
TGTGACTGACCGTTAA31400.12140018488397585No Hit
GCTATACGACAGGTGA30870.11935107348306796No Hit
AGTTCACGACCAGAGA30500.11792056175035869No Hit
ACCCTTTCTAGGTGAC29860.11544616307756428No Hit
TGTACCCTGCTGAGAG29670.11471157597157844No Hit
ACTGGAACTCTGGAAG29220.11297176440476987No Hit
ACGCTCTTGCCTCAAA28760.11119329035869888No Hit
TTCCAAACTCCGCTAG28550.11038137829418823No Hit
TCAGTCCACCCAGCAC28050.10844825433106758No Hit
TCCCAGACTCCTAACA27740.1072497174739328No Hit
ACACTCCACCGTACAT26790.10357678194400359No Hit
CACAGCTCTCTCTGGG26730.1033448070684291No Hit
CAGTGGAGAGATCATC26590.10280353235875533No Hit
ACATGTGTGTCAATGC26200.10129569566752124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)