FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2586487
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA253842198.14164927177286No Hit
ACCGCGAA78800.30466033658781194No Hit
AACGCAAA62720.24249106993385233No Hit
AACGCCAA41870.16187980067172192No Hit
AACGAGAA31980.12364260868119577No Hit
AACCCGAA31570.12205744703143685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)