FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4675206
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT456623597.66917222471052No Hit
AAGTTGAA194800.4166661319308711No Hit
AATTTGAT104010.2224714804010775No Hit
AAGTTGCT94090.20125316403170257No Hit
AAGTTCAT89630.19171347743821343No Hit
AAGTAGAT85020.18185294936736476No Hit
AACTTGAT84470.1806765306170466No Hit
AAGATGAT79960.17102989686443765No Hit
ATGTTGAT63960.13680680594609093No Hit
AAGTTTAT61390.13130972196733148No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)