FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1451630
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT286421.973092316912712No Hit
GGCTTGCGACGACATT123050.847667794134869No Hit
AAATAGGTGTTGCGTA122850.8462900325840607No Hit
TATCACTACTGGTCCG105610.7275269869043764No Hit
ATGGGTTACCATGCGC99380.6846097145966947No Hit
CTAATCTTGCCACTTC67630.465890068405861No Hit
GTGTTGTGAGGGTAGT65460.4509413555795898No Hit
CTGCTTTCTCCACTTC59660.4109862706061462No Hit
AGAGAATTGCCTCCTA56410.3885976454055097No Hit
GGGGGGGGGGGGGGGG45260.31178743894794125No Hit
AGCCGAGCTGCCCTTT43980.3029697650227675No Hit
CTGGCCAGAGGAATGC43140.2971831665093722No Hit
AATGGTGCTTCGTACA39320.27086792088893175No Hit
GCTCCTAACCTATCTT36290.2499948333941845No Hit
TCCCTGTGACCCGCAA33390.23001729090746265No Hit
TGCCGTTACAATCTGC29620.20404648567472428No Hit
GAGAGAAGACTCACGG29390.20246205989129462No Hit
TTGTCAACTAATACAG27930.19240440057039326No Hit
CTTAATCTGGGAATTA27880.1920599601826912No Hit
TCTTTCCACCGAGTGA27850.19185329595006992No Hit
GCTGTTCTGATAGGTA27420.18889110861583186No Hit
GTAATCGTGATCCTCC26620.18338006241259824No Hit
GGGATGTGAAGGTGCA25740.17731791158904128No Hit
TAGCGCGACAAGACAT24950.1718757534633481No Hit
TCGTATACTTTCTGGA24560.1691891184392717No Hit
AGTCCTGCTCCTAGTA24140.16629581918257408No Hit
GCAAATCTGGAATTGA22920.1578914737226428No Hit
GTTGTTGGATTCCATT21680.14934935210763073No Hit
TGCAATGACACCTTGA21260.14645605285093308No Hit
TTGCGTCACCACTCAA21000.14466496283488217No Hit
TGTCAATCTGGTGTCC20820.1434249774391546No Hit
GGTTGAACTTCTTTGT20220.1392916927867294No Hit
CCTTTCTACTCGGGCT20130.13867170008886562No Hit
TTGTTTGTGGCGCTGT19890.13701838622789553No Hit
TACAACCGATCGCTAA19460.13405619889365747No Hit
TACGCCTTGCTGATCA18730.12902736923320682No Hit
CAAGTGGGATAGCGAG17750.12227633763424563No Hit
CCTTTCTACTCATTTC17630.12144968070376061No Hit
GCTCCTAACGAATAGT17590.12117412839359892No Hit
CTGCCATTGTCTTTGT17540.12082968800589682No Hit
TTCCACTCTCGAATCT17340.11945192645508843No Hit
TAAGGGCGATTTCTTG17040.11738528412887582No Hit
TCTTTCCACTTCGCAA16890.11635196296576951No Hit
AGAACGCGAGGAGTCA16790.11566308219036531No Hit
AATCCAGACTACCAAC16500.11366532794169312No Hit
CCCACCTCTCATGATC16410.11304533524382934No Hit
ATGTGTGTGCCTTTGC14950.10298767592292803No Hit
CGGAATTTGAGAGGCT14790.1018854666822813No Hit
TATTGCTTGTTCGTTT14740.10154102629457919No Hit
CCAGCTTTGGGAATGC14550.10023215282131122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)