FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4241217
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGTAAA415845298.04855540284781No Hit
TAGGAAAA131910.3110192192476829No Hit
AAGGTAAA119560.28190021873438686No Hit
TAGCTAAA80630.19011052723781877No Hit
TACGTAAA75040.17693034805811636No Hit
TATGTAAA53890.1270625860454676No Hit
TAGGTAAT43300.10209333783204207No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)