FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5575103
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA547199298.15050950628176No Hit
CAGGAAGC341790.6130649066035192No Hit
CAGGAATA132670.23796869761868078No Hit
CAGGAAAA86510.15517202103710012No Hit
CACGAAGA64230.11520863381358157No Hit
CAGGAACA62990.11298445965931034No Hit
AAGGAAGA62030.11126251837858421No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)