FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3218762
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA128410.3989422020018877No Hit
GTCGACCGATGCTCAA115900.3600763274824296No Hit
CATTCAACTAGGCATG112470.3494200565310514No Hit
GGGGGGGGGGGGGGGG103180.3205580282108463No Hit
NNNNNNNNNNNNNNNN92680.2879367906045865No Hit
ACTGGGCACTTCTCGC91890.2854824308227822No Hit
TGTAAGCTGTTGTGAC87860.27296208915104625No Hit
GCTTTAGGAACTAGTC72550.22539721793658554No Hit
TAGTTGCGACATAGCT53630.16661685455463932No Hit
CATCAGTGATTCGCAA49970.15524602316045735No Hit
CAGGAGCCTCGTGCAC44860.13937035419207758No Hit
CAGGAGCCTTCCAATG38170.1185859656600892No Hit
TCCTTAAACAGGGAGG35690.11088114001594403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)