FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6522475
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT639939698.11300158298806No Hit
CGTAGGTA303660.4655594693732057No Hit
CGTAGGGT163080.25002778853119406No Hit
CGTAGGAT93640.14356513440066845No Hit
CGAAGGTT92380.14163335237007424No Hit
CGGAGGTT82670.12674636545176485No Hit
CGTACGTT68130.10445421408284432TruSeq Adapter, Index 22 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)