FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3801358
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA372270897.9310025522458No Hit
ATACGGCA124560.3276723739253183No Hit
ATCCGCCA110170.2898174810159948No Hit
ATCCCGCA86470.22747134050515633No Hit
ATCCGGAA80930.2128976013308928No Hit
AACCGGCA76760.20192783736759337No Hit
ATCCAGCA44680.11753694337655121No Hit
ATCAGGCA38830.1021477061618506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)