FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4267067
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA416987197.72218247334762No Hit
CCCACCAA310210.7269864757220826No Hit
CCCCCCCA269220.6309251764736762No Hit
CCCACACA47570.11148172737854832No Hit
CCCAACCA43080.1009592771803208No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)