FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2058558
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA201840798.0495570200111No Hit
CGTGCAAA79440.3859011988003253No Hit
CGAGCTAA38760.18828714080438833No Hit
AGTGCTAA36720.17837729128836788No Hit
CGTGGTAA27870.13538603235857333No Hit
CGGGCTAA24720.12008405884118883No Hit
CGTCCTAA22380.10871687851398892No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)