FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7011852
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCA675882496.39142412018964No Hit
GTGGCGCA801251.1427080891039914No Hit
GGGGAGCA723111.031268201325413No Hit
GAGGAGCA113790.16228237561203518No Hit
GTGGAGAA88020.12553031638431617No Hit
GTGTAGCA77230.11014208514383932No Hit
GTGGTGCA72760.10376716450946198No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)