FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4684003
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA247740.5289065784116705No Hit
GATGAATGACTCCTAC242300.5172925807263574No Hit
CGACCAGACGCGCTGT230680.49248474008236115No Hit
TAGCTTTACCCTATCC218990.4675274546152084No Hit
CCAGGACTGTAACTCG170170.36330036509370295No Hit
ATCTGTACTGGGACTA156870.33490584869394835No Hit
CTTCCTTTGGCTCAGC147050.31394087493112194No Hit
GTTCTCGACCGTAGAG139830.29852670888554084No Hit
CGATCAAACCCGGCTA139400.29760869068615026No Hit
AGACCATTGAATCCAC128350.27401775788785787No Hit
TGCTGCTACTTTCTTG121870.2601834371156466No Hit
GGGGGGGGGGGGGGGG121740.2599058967297843No Hit
ACAGCCGACTTGCGTA108670.23200241332040136No Hit
AACTTACCTCACCTAA104650.22342001061912217No Hit
CGCGTTGGAGCGGTTC95650.20420567621327315No Hit
ATCGAAAGATTTCCGC94950.20271122798170713No Hit
CCCTGAACTAGCTTTG90090.19233548740254863No Hit
AGTGGAGTGAGTTGAA89670.19143881846360902No Hit
GTAACTGTGTGAAAGT87230.18622959891357885No Hit
CAATTCGGATAACGGG85840.1832620517108977No Hit
TTCCTAAACTAATGCC78050.16663097781961284No Hit
GGGTAGAACCAGTCTA77720.1659264522247317No Hit
AAGAACCCTTAACCCA76680.16370612913783358No Hit
CGCGATCGATATCTGG76090.16244652277122795No Hit
TTTAGTCTGAGCAATA74370.1587744499736657No Hit
TGGAACACTCCTAGTA73220.1563192850218072No Hit
GTGAAGCGATCCCAGG72990.1558282520314355No Hit
TCCGGGAACGTTCTCC72260.15426975601851664No Hit
TGCAGATACTGCCACG71950.1536079289445374No Hit
GGCAACAGAATAGCAA70440.15038419061644495No Hit
CTTTAACTGTCCGTAA68410.14605029074490344No Hit
AGTCCTGCTCGAACGA68050.1452817173686695No Hit
TGATAGAGAGACTGTT67860.14487608142010158No Hit
CACATCCTGAGCCTAT65880.1406489278508148No Hit
TGCAGTATGACACCGC65640.14013654559999214No Hit
TCTCAGAGATGCATGT65440.13970956039097326No Hit
AGGTGTGGATCATGTG64170.1369982043137035No Hit
CTATTGGGACTTGTGA63320.13518351717537327No Hit
CATAGGTACAAGGTGC62970.13443629305959026No Hit
TCAAAGCACTCTGCAA62450.13332613151614123No Hit
CTTAGATCTTGTCACA62210.13281374926531858No Hit
ATTTCTGACGGGTAGT61970.13230136701449594No Hit
TGAACTGTGAACGTAA61180.13061477543887143No Hit
ATGTACGTGTACTTTC60880.12997429762534313No Hit
TACGTTTACTGCACCG60770.12973945576038273No Hit
TGGCAATTGAGTGGTG60320.1287787390400903No Hit
TCTATGGGATGCTCAA58800.1255336514515469No Hit
TGAGGGATGTACGTTG58460.12480777659621481No Hit
GCAACTTGAAGGTGCA58090.12401785395952993No Hit
TTCTTAGACGTCCCGA57680.12314253428104124No Hit
CGAGTCTCTGCTACGC57660.12309983576013935No Hit
AGAGTACCTTAATCGC57150.12201102347714124No Hit
TCCATTTGAAATCTGC55240.11793331473101105No Hit
TACTGTTTGCTTAAGC55130.11769847286605067No Hit
GGTCTAAACTCCTACC54910.11722878913612994No Hit
CACCAGGTGCGCCACA53910.11509386309103559No Hit
CTACAACGAATCTGTG53400.11400505080803747No Hit
CTCAATTTGGAATCTC53110.11338592225496012No Hit
CTAGCTCACGAATAGT53020.11319377891090164No Hit
CATTCTATGCCTAGCG52770.11266004739962805No Hit
GGGTGTGCTCGCAAAG52740.11259599961827524No Hit
TCCGGGTGAACACCTA52690.11248925331602051No Hit
TTGCGGTCTTTTGGGT52180.11140044103302241No Hit
GGGATGTGACTGGAAG51450.10984194502010353No Hit
TGCTAGTGAAGGCGTA51340.10960710315514315No Hit
CGAGTCTCTTGGAACG51210.1093295627692809No Hit
CTTTCGTCTCGAACGA50970.10881718051845826No Hit
TCGGACCGATAGGCGA50330.10745082784959788No Hit
GAGTGTTACACCTGCG50250.10728003376599034No Hit
ACCAAGTTGAAGCTAA50000.10674630225471675No Hit
GTAATCTCTACACAAA49760.10623392000389409No Hit
AGCCAATTGTTATGGC49580.10584963331577713No Hit
ACCTCAGCTAATCCGT49370.1054012988463073No Hit
CACATTACTGATGGAC49320.1052945525440526No Hit
GGTCGCATGGTACTAC48950.10450462990736768No Hit
CATAGTCGAAGATTCC48880.1043551850842111No Hit
ATGTCCAGACCGCTAG48850.10429113730285824No Hit
TGTAAGCACGCGCTGT48360.10324502354076204No Hit
AGACTACTGGCCCTAG48350.10322367428031108No Hit
TGCGCAGACATCAGGG48320.10315962649895827No Hit
CTAACAGTGCATGATC48290.10309557871760543No Hit
TAGTACCGAACGAGCA47410.10121684379792242No Hit
AGGCGATGACCTGCGA47030.10040557190078656No Hit
AGCTTGTGATTGCGTA46940.10021342855672807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)