FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6238894
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT609512797.69563323242869No Hit
GCACGTTA623290.9990392527906388No Hit
GCACGTAT117850.18889566003205055No Hit
GCACGATT103760.16631152893445536No Hit
GCCCGTTT87180.13973630582600058No Hit
GCACGGTT78260.12543889990757978No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)