FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3508348
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA96250.274345646441003No Hit
GGACACCTGGCTCCTT95700.2727779570327687No Hit
GGGGGGGGGGGGGGGG86520.24661179563714888No Hit
GTTAAGAGAGTACGTT67980.19376641085775984No Hit
CGCTTACTGATCACAC60250.17173324881112137No Hit
ATCTTACTGGTTTGGT55750.15890669910738614No Hit
TTGTGGTGAAAGACAT55420.15796608546244556No Hit
TACCAGTGATACGATC54950.1566264236044999No Hit
ATAGATGGAGAGTAAT54040.15403261021996678No Hit
ATTCCTAACTGCGTGC53350.1520658725987274No Hit
ATATGCCGAGAACAGC48850.13923932289499216No Hit
GCGGTTCGAAGCAAGC47500.1353913579838716No Hit
TGGAACACTTGAGGCA46670.13302557214962712No Hit
CTTGACGCTCAGGGTA45720.13031774498994966No Hit
GCTATACGACAGGTGA44120.12575719398417717No Hit
AGGTAGCGATTGACCA44110.1257286905403911No Hit
AGCTCTGCTGGCCTGT43820.12490209067059482No Hit
CTTTCTGCTCTTGTGA43130.12293535304935543No Hit
ACTGGAACTCTGGAAG40820.11635105753477135No Hit
ACGCTCTTGCCTCAAA39390.11227506507336216No Hit
TGTGACTGACCGTTAA38610.11005179645804807No Hit
AGTTCACGACCAGAGA38230.10896866559417709No Hit
TGTACCCTGCTGAGAG37710.10748648651730103No Hit
TTCCAAACTCCGCTAG36920.10523471445820085No Hit
ACCCTTTCTAGGTGAC36450.10389505260025517No Hit
TCCCAGACTCCTAACA35840.10215634252930439No Hit
ACATGTGTGTCAATGC35390.10087368755893086No Hit
ACACTCCACCGTACAT35220.10038912901456754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)