FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3211792
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT567461.766801835237151No Hit
GAAGCAGTGGAACCTT194890.6067952096524308No Hit
GTTCTTCCTAACGTAA166490.5183710526709077No Hit
GATACGTACCGCTCGA137220.42723812750016193No Hit
CGCTTAAGATAATAGG130880.4074983685120332No Hit
CATGGAGGATCGACAT130670.40684452791463455No Hit
TGTCCCATGAGACAAT130360.40587933465180803No Hit
AAAGCATGATCTTTGT118550.3691085848647733No Hit
TGAGCGCACAGGACAC115780.36048411603242053No Hit
TGTCGAAACTTCGCAA109450.3407754923108346No Hit
TAATTGCCTGTCTGGC104660.32586169963683825No Hit
GGGGGGGGGGGGGGGG100660.3134075930197223No Hit
GGAAGGACTAGGTAAT94050.2928271818349383No Hit
AATGATGGAAAGCTAA86260.268572809198105No Hit
CATGTCAGAGGTTTGT84580.2633420844189163No Hit
TCGACCTTGTTTCGCC78850.24550157668989772No Hit
ATGGGTACTTGGCTGC68030.21181321829059915No Hit
GTGAGATCTCGATTAC67070.20882423270249134No Hit
AAACGACCTAGGGAGG61690.19207345930247038No Hit
AGCCTACCTTAACTCG60480.18830609205079282No Hit
TTGCGATGACATTCAG59800.18618889392588311No Hit
CAGCTCACTGTTTACG59710.18590867652699802No Hit
TGTTCCTCTTTATGGC57530.17912118842066982No Hit
GCTATGATGACCTGCG57470.17893437682141308No Hit
CAATGTGACCAACGCC53850.16766341033292317No Hit
CCTGTTGACCCTAGTA53370.16616891753886928No Hit
TAACCAGACATCACAC53110.16535940060875673No Hit
CTGCCTTGACCATAAC53090.16529713007567115No Hit
CACAGCTCTGGACTGA51680.1609070574931378No Hit
CATGATGTGTCATGTG51590.16062684009425265No Hit
CATGCAAACGAAGGCT51000.15878985936822806No Hit
ATGGGTACTTTCGGGC50520.15729536657417417No Hit
TGGGCCATGCGTTCTC49910.155396115315064No Hit
ATGCCGCGATGCCACG49780.15499135685000773No Hit
CTATTCAACCGAACGA49540.15424411045298075No Hit
TTGTTTGTGATACGCT49190.1531543761239831No Hit
AGCTTGTGACTCACTC49170.15309210559089753No Hit
AGAACGCGAGGAATAT49040.15268734712584128No Hit
ATTAGCGTGGTCGGTC46650.14524601842211451No Hit
CATTAGTCTATTCTGG46420.14452990729163034No Hit
CCGCTATTGTTCGCAA46070.1434401729626327No Hit
CACTATACTACGCCAC45230.14082481057303836No Hit
GGGTCGTACCGCTCGA44950.13995302310984023No Hit
AGCTCGGACCTTAAGC44460.13842739504924353No Hit
GGGCTGACTAATACAG43610.13578089739310642No Hit
TTGACGTGACCTCAAA43300.13481570413027993No Hit
AACGTCCCTTACAGAA42310.13173331274254374No Hit
CCCAATGCTGGAATGC41870.13036336101466098No Hit
AACCAACACCGGAATG41740.1299586025496047No Hit
TGGAGTTACAAGTCTC40880.12728096962692478No Hit
CTGCCATTGCACAGTT40870.12724983436038198No Hit
ATAGGAAACAGACTTC40700.12672053482915457No Hit
TTGTAACCTCATCCTC40240.12528831256818623No Hit
CTGATTACTGCTTTGA40150.12500809516930111No Hit
GGTAGCCTGTGCCACG39940.12435425457190254No Hit
ATAGCCAACATGGCCC39940.12435425457190254No Hit
CCTACGGGATGGAACG39890.1241985782391886No Hit
GGCTTGCGAGTACGTT39840.12404290190647464No Hit
TCCAAAGTGAAGGCCA39480.12292203231093421No Hit
TGTTTGTTGCGCTCGA39370.12257954437896353No Hit
CGCTGAGTGTTAGCTG39070.12164548638267983No Hit
CGCTTACTGGCCACGT39050.12158321584959425No Hit
CGATCAAACCGATCGC37960.11818947179643015No Hit
ATCTTACTGCGCACTG37870.11790925439754504No Hit
CATGTTACTAACGTGG37830.11778471333137389No Hit
TCAGGCTCTTAAAGCA37770.11759790173211716No Hit
CGCTTCCCTGCGCTGT37260.11601000313843488No Hit
GCAGATACTCGGCTCA36790.11454664561092376No Hit
CTCGGATCTTTCTGAG36670.11417302241241026No Hit
TTCTAACACTACGTTG36330.1131144233499554No Hit
AGTGGTACTCAACGCC36300.11302101755032705No Hit
AGCCGGTACGCGCAAA36220.11277193541798472No Hit
CCTCCCTTGTTTCGCC36010.11211809482058613No Hit
TGGGTGCACTTCTGAG35890.11174447162207266No Hit
CGAGTCTCTTACTTTC35660.11102836049158851No Hit
CTTAGGCCTTATGACC35110.10931592083173505No Hit
ACCTGCTTGCCAAACT34810.10838186283545137No Hit
ATCGCAATGTAACTCG34610.10775915750459557No Hit
GTAAGAAACGACAAAT34590.10769688697150999No Hit
GCGACGTTGCTTAGTG34550.10757234590533882No Hit
CCTTCAGTGTAGCTTG34530.10751007537225324No Hit
GCGTCGATGCTTGAAC34390.10707418164065419No Hit
TACGCCTTGGGTTGAG34280.1067316937086835No Hit
GATACCATGTCTGGAT34250.10663828790905512No Hit
AGAACAATGAGTCGGA33930.10564195937968586No Hit
AACAGCTACTCGAGAG33690.10489471298265891No Hit
ATTGAGAGATGATCAC33440.10411633131908915No Hit
TACAACCGATTCCATT33340.10380497865366126No Hit
TGGTCCTTGTTTCTGT33310.10371157285403289No Hit
TGAGATAGACTCATCC33230.10346249072169056No Hit
GTCCTGACTTTACGAC33130.10315113805626266No Hit
AACCACTGAAAACATG33080.10299546172354872No Hit
TTCACGCTGTGGGCAA33050.10290205592392036No Hit
TATCTCCCTGGAATTA32710.10184345686146551No Hit
ACCTCCATGGAATTGA32660.10168778052875155No Hit
AGAACATGAAAGCTAA32550.10134529259678086No Hit
ATTCCTAACATTGCCA32140.10006874666852647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)