FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2589005
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA253796498.0285476466828No Hit
CGTGCAAA94090.3634214688654522No Hit
CGTGCGAA45680.17643843870521686No Hit
CGAGCTAA38280.14785602963300573No Hit
CGTGCTTA34190.1320584548890404No Hit
CGTTCTAA33430.12912296422757005No Hit
CCTGCTAA32990.12742346963408724No Hit
CGTGGTAA30240.11680162842481957No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)