FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004948520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17592679
Sequences flagged as poor quality0
Sequence length34
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTTA19800.024.32744828
GACCCGT24250.019.45926526
ACCCGTT26300.018.26218627
ACGAGAC27050.018.06392322
AGACCCG27200.017.70900225
TCCGAGC29450.017.39700113
TCTCCGA29000.017.18425211
ATCTCCG29650.016.94926510
CCACGAG29450.016.92268220
CCCACGA29350.016.884919
CGAGCCC31200.016.15223715
CACGAGA30950.015.832479521
CCGAGCC34000.014.98674414
CTCCGAG34850.014.82184312
GCCCACG34700.014.4831218
CTTATAC43000.013.0643161
TATACAC68650.011.7252133
AGCGTCA10700.011.5131023
ACATCTC54750.010.6362938
TACACAT67550.010.4448235
Produced by FastQC (version 0.11.5)