FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5308734
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT518042297.58300189838106No Hit
ATCGTACA228500.4304227712294494No Hit
ATAGTACT148560.2798407303888272No Hit
ATCGAACT130760.24631107906329455No Hit
AACGTACT113270.21336537110354373No Hit
ATCGTAAT79560.14986623929547044No Hit
ATCCTACT78130.14717256505976756No Hit
CTCGTACT56190.10584444426863354No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)