FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4400585
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA227430.5168176503805744No Hit
CGACCAGACGCGCTGT212750.48345844927435777No Hit
TAGCTTTACCCTATCC199350.4530079523517896No Hit
CCAGGACTGTAACTCG156910.3565662292627003No Hit
ATCTGTACTGGGACTA146360.33259214399903647No Hit
GTTCTCGACCGTAGAG136830.31093593238171746No Hit
CTTCCTTTGGCTCAGC136480.3101405835815011No Hit
CGATCAAACCCGGCTA126850.2882571294498345No Hit
AGACCATTGAATCCAC117510.26703267860977575No Hit
TGCTGCTACTTTCTTG112110.25476158283500944No Hit
GGCAACAGAATAGCAA110210.2504439750624065No Hit
GGGGGGGGGGGGGGGG109360.24851241369045252No Hit
ACAGCCGACTTGCGTA106270.241490619997114No Hit
AACTTACCTCACCTAA93460.21238085390919617No Hit
CGCGTTGGAGCGGTTC88130.20026882789447314No Hit
ATCGAAAGATTTCCGC87400.1986099575397362No Hit
CCCTGAACTAGCTTTG85000.19315613719539562No Hit
GTAACTGTGTGAAAGT84570.19217899438370126No Hit
AGTGGAGTGAGTTGAA83720.1902474330117473No Hit
CAATTCGGATAACGGG80730.18345288183275632No Hit
GGGTAGAACCAGTCTA75770.17218165312111913No Hit
AAGAACCCTTAACCCA74370.16900025792025378No Hit
TTCCTAAACTAATGCC71340.1621148097355238No Hit
CGCGATCGATATCTGG69480.15788809896865985No Hit
TTTAGTCTGAGCAATA69470.1578653747172251No Hit
TCCGGGAACGTTCTCC66720.1516162055726682No Hit
TGGAACACTCCTAGTA66620.15138896305832067No Hit
GTGAAGCGATCCCAGG65930.14982098970932273No Hit
TGCAGATACTGCCACG65220.1482075678574553No Hit
CACATCCTGAGCCTAT63620.14457168762789493No Hit
CTTTAACTGTCCGTAA62450.1419129502100289No Hit
AGTCCTGCTCGAACGA61880.140617667878248No Hit
TGATAGAGAGACTGTT61860.1405722193753785No Hit
TGCAGTATGACACCGC61100.13884517626633733No Hit
AGGTGTGGATCATGTG60060.13648185411712307No Hit
GCAACTTGAAGGTGCA59770.13582285082551526No Hit
CATAGGTACAAGGTGC59710.13568650531690674No Hit
CTATTGGGACTTGTGA59550.13532291729395068No Hit
ATTTCTGACGGGTAGT58610.13318683765908396No Hit
TACGTTTACTGCACCG58390.1326869041275194No Hit
CTTAGATCTTGTCACA58070.13195972808160733No Hit
TCTCAGAGATGCATGT57910.1315961400586513No Hit
GAGTGTTACACCTGCG56720.12889195413791577No Hit
TCAAAGCACTCTGCAA56360.12807388108626466No Hit
GATGAATGACTCCTAC56150.12759667180613485No Hit
TGGCAATTGAGTGGTG55600.12634683797722346No Hit
GGTCTAAACTCCTACC55450.1260059742057022No Hit
TGAGGGATGTACGTTG55130.12527879815979012No Hit
AGAGTACCTTAATCGC54790.12450617361100855No Hit
ATGTACGTGTACTTTC54790.12450617361100855No Hit
TGAACTGTGAACGTAA53310.12114298439866518No Hit
TCTATGGGATGCTCAA52850.12009766883266657No Hit
GGTCGCATGGTACTAC52800.1199840475754928No Hit
TTCTTAGACGTCCCGA51930.11800703770066935No Hit
CGAGTCTCTGCTACGC51630.11732531015762677No Hit
TACTGTTTGCTTAAGC51130.11618909758588916No Hit
GGGTGTGCTCGCAAAG51090.11609820058015015No Hit
GGGATGTGACTGGAAG50870.11559826704858558No Hit
TCCATTTGAAATCTGC50510.1147801939969345No Hit
CACCAGGTGCGCCACA50280.1142575362139352No Hit
GCATGATACTTGCGTA49960.1135303601680231No Hit
CATTCTATGCCTAGCG48990.11132610777885213No Hit
TTGCGGTCTTTTGGGT48970.11128065927598263No Hit
TCCGGGTGAACACCTA48460.11012172245281025No Hit
CTACAACGAATCTGTG48350.10987175568702798No Hit
GTAATCTCTACACAAA48070.1092354766468549No Hit
TCGGACCGATAGGCGA47390.10769022754929174No Hit
AGACTACTGGCCCTAG47230.1073266395263357No Hit
CTTTCGTCTCGAACGA47020.1068494302462059No Hit
CTAGCTCACGAATAGT46700.10612225420029384No Hit
ACCAAGTTGAAGCTAA46690.10609952994885907No Hit
GGCTGACTGAAACTGA46470.10559959641729452No Hit
AGCCAATTGTTATGGC46280.10516783564003424No Hit
CGAGTCTCTTGGAACG45870.10423614133120937No Hit
CACATTACTGATGGAC45570.10355441378816681No Hit
ATGTCCAGACCGCTAG45570.10355441378816681No Hit
TGCTAGTGAAGGCGTA45320.10298630750229798No Hit
TGTAAGCACGCGCTGT45060.10239547696499443No Hit
TGCGCAGACATCAGGG44600.10135016139899583No Hit
TAGTACCGAACGAGCA44250.10055481259877948No Hit
GGGCCTTGACTATCTT44200.10044119134160572No Hit
GCCATTCACCGGAAGT44020.10003215481578016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)