FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4549569
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA438525896.38842712353632No Hit
TCCTGCGA416740.9159988561553853No Hit
TCATGCGC187940.41309407550473465No Hit
TCATGCAA123240.27088280230500955No Hit
TCAAGCGA102980.22635111150089163No Hit
ACATGCGA92870.20412922630693148No Hit
TCATGCCA90440.19878806102292326No Hit
TCATCCGA86480.19008393981935431No Hit
TCATGAGA76030.16711473108771402No Hit
TAATGCGA72630.1596414957109124No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)