FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3336225
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG327421898.14140233347571No Hit
ATTGGCCG154150.4620491723429925No Hit
ATTGGACA71250.2135647325944743No Hit
ATTGGACC49130.14726224999812662No Hit
ATAGGACG44030.13197551124399584No Hit
AATGGACG41540.12451198585227315No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)