FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4118682
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTCGAG402165197.64412498949908No Hit
CGCTCGAG110280.26775555869571865No Hit
AGCTCGCG89770.21795807493756497No Hit
AGCACGAG70970.1723124047935723No Hit
AGCTCGAA67040.16277051736453554No Hit
AGCTCCAG58030.14089458715190928No Hit
AGCGCGAG52110.12652105697890734No Hit
AGCTCGAC51950.12613258319044782No Hit
AGATCGAG45830.11127346078187149No Hit
AGCTGGAG44850.10889405882755698No Hit
AGCTAGAG41340.10037191509322642No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)