FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4131968
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT123430.2987196415848332No Hit
TCGCGGTGAGTCTTGA113000.2734774325454602No Hit
GGGGGGGGGGGGGGGG107250.2595615454911558No Hit
GTTAAGAGAGTACGTT78220.189304467023946No Hit
CGCTTACTGATCACAC75020.1815599733589418No Hit
TACCAGTGATACGATC68470.16570796288838635No Hit
ATCTTACTGGTTTGGT65920.15953656949908615No Hit
TTGTGGTGAAAGACAT64870.15699540751525665No Hit
ATAGATGGAGAGTAAT62390.1509934249248784No Hit
ATTCCTAACTGCGTGC61860.1497107431616121No Hit
ATATGCCGAGAACAGC59800.14472522536476565No Hit
TGGAACACTTGAGGCA58660.1419662494966079No Hit
CTTGACGCTCAGGGTA54120.13097874910938323No Hit
CTTTCTGCTCTTGTGA53810.13022850128558594No Hit
GCGGTTCGAAGCAAGC53010.1282923778693349No Hit
AGGTAGCGATTGACCA52900.12802616089960037No Hit
GCTATACGACAGGTGA52500.12705809919147487No Hit
AGCTCTGCTGGCCTGT52260.12647726216659955No Hit
TGTGACTGACCGTTAA47970.11609480034695333No Hit
ACGCTCTTGCCTCAAA47800.11568337412099998No Hit
AGTTCACGACCAGAGA47660.11534455252315604No Hit
ACTGGAACTCTGGAAG47090.11396506458907717No Hit
ACCCTTTCTAGGTGAC45680.11055264706793469No Hit
TTCCAAACTCCGCTAG44720.10822929896843343No Hit
TGTACCCTGCTGAGAG44580.1078904773705895No Hit
ACACTCCACCGTACAT43280.10474427681918157No Hit
TCCCAGACTCCTAACA43280.10474427681918157No Hit
TCAGTCCACCCAGCAC43190.1045264629348533No Hit
ACATGTGTGTCAATGC42650.10321957962888385No Hit
CACAGCTCTCTCTGGG42410.10263874260400856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)