FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004948548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30200406
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC2952528497.7645267417928No Hit
CAACCATA1458930.4830829095476398No Hit
CAACCAAC1125760.3727632006006807No Hit
AAACCATC533950.1768022588835395No Hit
CACCCATC533860.17677245795967114No Hit
CAACCCTC395420.13093201462258489No Hit
CAACAATC338160.11197200461477239RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)