FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3835572
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC367346895.77366817778417No Hit
TAAGCCCC828852.1609553933546284No Hit
AAAGCCAC156540.4081268712984661No Hit
TAACCCAC107840.28115754312524965No Hit
TAAGCCAA99990.2606912345798749No Hit
TAAGCAAC80400.2096167142736468No Hit
TAATCCAC76780.2001787477852065No Hit
TAAGACAC46110.12021674993977431No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)