FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4661595
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC452291797.02509548770324No Hit
AGGCTACA262460.5630261745175202No Hit
AGGCTCCC191130.4100098785930567No Hit
AGGCAACC141260.30302932794461984No Hit
ACGCTACC89310.19158678520978334No Hit
CGGCTACC84650.18159020678544577No Hit
AGTCTACC70940.1521796724082637No Hit
AGGATACC67300.14437118625706435No Hit
AGCCTACC62400.13385976259198837No Hit
AGGCTAAC57190.12268333049095857No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)