FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4026712
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA388070596.37403916644647No Hit
TCCTGCGA360280.8947250262745386No Hit
TCATGCGC176770.4389934020610364No Hit
TCATGCAA106950.26560131442228796No Hit
TCAAGCGA88180.2189876008018453No Hit
ACATGCGA75720.1880442405615301No Hit
TCATGCCA73010.18131418388004902No Hit
TCATCCGA70230.1744102880960943No Hit
TAATGCGA64390.15990714011829005No Hit
TCATGAGA62510.15523831850899691No Hit
TGATGCGA56200.1395679651288694No Hit
TCATGCGT42340.10514782283908063No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)