FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14047162
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGTTTA1375355097.90981267248145No Hit
GAGGTTAA1524641.0853722623829638No Hit
GAGGTATA209600.1492116343500559No Hit
GACGTTTA167280.11908455245265913No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)