FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3926865
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC382555597.42007937629636No Hit
CCGCTTAC129000.32850632756664666No Hit
CAGCATAC112730.2870737853223882No Hit
CAGCTTAA109700.2793577064655902No Hit
CAGCTAAC103360.26321251176192717No Hit
AAGCTTAC79430.20227331471797477No Hit
CAGATTAC71200.18131512033135846No Hit
CACCTTAC66670.16977920045634368No Hit
CATCTTAC47650.12134361634535437No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)