FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3840892
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA377887598.38534902829863No Hit
AACGCAAA91030.23700223802179285No Hit
AACGCCAA66570.17331911441404757No Hit
AACGAGAA50230.13077691327951943No Hit
AACGCGAT48580.12648103617597162No Hit
AACCCGAA46980.12231533716647071No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)