FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3936803
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA110990.2819292710354061No Hit
GGACACCTGGCTCCTT108410.27537573000223786No Hit
GGGGGGGGGGGGGGGG101120.2568581663852623No Hit
GTTAAGAGAGTACGTT77380.19655542835138054No Hit
CGCTTACTGATCACAC71620.18192426697500483No Hit
TTGTGGTGAAAGACAT65680.1668358818056174No Hit
TACCAGTGATACGATC65650.16675967784011544No Hit
ATCTTACTGGTTTGGT65460.16627705272526971No Hit
ATAGATGGAGAGTAAT61880.15718337950870287No Hit
ATTCCTAACTGCGTGC60530.15375420106111481No Hit
ATATGCCGAGAACAGC58050.1474546732462864No Hit
TGGAACACTTGAGGCA56310.1430348432471729No Hit
GCGGTTCGAAGCAAGC53770.13658290750134056No Hit
CTTGACGCTCAGGGTA53230.13521123612230534No Hit
CTTTCTGCTCTTGTGA52040.13218847882406104No Hit
AGGTAGCGATTGACCA50500.12827667526162725No Hit
AGCTCTGCTGGCCTGT50480.12822587261795929No Hit
TGTGACTGACCGTTAA48810.12398385187168369No Hit
GCTATACGACAGGTGA47850.12154532497562108No Hit
ACTGGAACTCTGGAAG47030.11946241658523425No Hit
AGTTCACGACCAGAGA46410.11788753463152717No Hit
ACCCTTTCTAGGTGAC45740.11618564606865013No Hit
ACGCTCTTGCCTCAAA43830.11133399359835887No Hit
TGTACCCTGCTGAGAG43820.1113085922765249No Hit
TTCCAAACTCCGCTAG43190.10970830900098379No Hit
TCAGTCCACCCAGCAC42410.10772700589793292No Hit
ACATGTGTGTCAATGC41900.10643153848439964No Hit
ACACTCCACCGTACAT41490.10539008428920624No Hit
TCCCAGACTCCTAACA41450.1052884790018703No Hit
CACAGCTCTCTCTGGG41440.10526307768003632No Hit
CAGTGGAGAGATCATC39900.10135127411760253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)