FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004948597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2971413
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA290346797.71334378627272No Hit
CGTGCAAA120710.4062377057649004No Hit
CGAGCTAA63310.21306361653529818No Hit
CGTGCGAA54750.18425577326342718No Hit
CCTGCTAA42300.14235651523366158No Hit
CGTCCTAA40890.1376112980592062No Hit
CGTGGTAA39490.13289973490726467No Hit
CGTTCTAA35710.12017851439702257No Hit
CGGGCTAA32360.10890441685487678No Hit
AGTGCTAA31840.10715440768415566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)