FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9167711
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCGT897522697.90040283774216No Hit
AGCTGCGA305340.3330602371737067No Hit
CGCTGCGT267990.2923194241179723No Hit
AGCAGCGT194100.21172133371132662No Hit
AGCTGCGG180780.1971920798986792No Hit
AGCGGCGT108820.11869920419611832No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)