FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9048430
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG880432697.3022502246246No Hit
GCTATTAG724440.8006250808151248No Hit
ACTATTAG309130.3416393783230903No Hit
TCTATTAA186970.206632531831489No Hit
TCTTTTAG177780.19647607374981077No Hit
TCTAATAG162090.17913604901623817No Hit
TCAATTAG148810.16445946976436795No Hit
TATATTAG125910.13915121186769416No Hit
TCTATAAG93650.10349861799229258No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)