FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004948634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30060059
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG2951361598.18215925657366No Hit
TCTATTAA630200.2096469604400976No Hit
ACTATTAG588200.19567493197534974No Hit
TCTTTTAG528360.17576811808652804No Hit
TCTATTTG527000.17531569049814572No Hit
TCAATTAG487620.16221525047572263No Hit
TCTAATAG485490.16150666903215327No Hit
TCTATTAT374900.12471698741509457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)