FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4040546
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG391950897.00441474988776No Hit
ATTGGCCG384580.9518020584346769No Hit
ATTGGACC119030.2945888996190119No Hit
ATTGGACA86260.21348599916941918No Hit
ATTGCACG73430.1817328648157947No Hit
ATAGGACG72970.1805944048155868No Hit
AATGGACG72040.17829273568473172No Hit
ATTCGACG52220.12923995915403513No Hit
ATTGGAAG51100.12646805654483328No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)