FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3302809
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT560301.6964347620464881No Hit
GAAGCAGTGGAACCTT195520.5919809471271272No Hit
GTTCTTCCTAACGTAA170600.5165300203554005No Hit
GATACGTACCGCTCGA154610.46811668491880704No Hit
CATGGAGGATCGACAT133850.40526109744765737No Hit
CGCTTAAGATAATAGG132670.401688381011436No Hit
TGTCCCATGAGACAAT130610.39545126587701557No Hit
AAAGCATGATCTTTGT121050.36650620729203537No Hit
TGAGCGCACAGGACAC120840.3658703848754197No Hit
TAATTGCCTGTCTGGC109050.33017349777113963No Hit
TGTCGAAACTTCGCAA107810.32641911778731375No Hit
GGAAGGACTAGGTAAT92540.280185744921974No Hit
AATGATGGAAAGCTAA86220.2610505179076356No Hit
CATGTCAGAGGTTTGT85580.2591127733998545No Hit
TCGACCTTGTTTCGCC82800.2506956956941803No Hit
GGGGGGGGGGGGGGGG82460.24966626892442162No Hit
GCTATGATGACCTGCG67870.20549174959859925No Hit
ATGGGTACTTGGCTGC67780.20521925427719254No Hit
AAACGACCTAGGGAGG63460.1921394788496701No Hit
AGCCTACCTTAACTCG62230.1884153761237783No Hit
TGTTCCTCTTTATGGC61480.18614458177872228No Hit
CAGCTCACTGTTTACG60230.18235992453696231No Hit
TTGCGATGACATTCAG60220.18232964727902826No Hit
CTGCCTTGACCATAAC57470.1740034013471563No Hit
CCTGTTGACCCTAGTA56900.17227759764491377No Hit
AGCTTGTGACTCACTC55150.1669790775064498No Hit
TAACCAGACATCACAC54760.1657982644470207No Hit
CAATGTGACCAACGCC54370.1646174513875916No Hit
GTGAGATCTCGATTAC53930.1632852520384921No Hit
CACAGCTCTGGACTGA53850.16304303397501946No Hit
CATGATGTGTCATGTG53180.16101445769343609No Hit
CATGCAAACGAAGGCT51600.1562306509398515No Hit
ATGCCGCGATGCCACG50670.1534148659519821No Hit
CTATTCAACCGAACGA50250.15214322111875075No Hit
ATGGGTACTTTCGGGC50030.15147712144420097No Hit
TGGGCCATGCGTTCTC49510.14990270403162884No Hit
AGAACGCGAGGAATAT48950.14820717758732038No Hit
CATTAGTCTATTCTGG48680.14738969162310023No Hit
TTGTTTGTGATACGCT48500.1468447009802868No Hit
ATTAGCGTGGTCGGTC48490.1468144237223527No Hit
GGGCTGACTAATACAG48100.1456336106629236No Hit
CACTATACTACGCCAC46160.13975982262371212No Hit
CCGCTATTGTTCGCAA46030.13936621827056908No Hit
GCAGATACTCGGCTCA45970.1391845547229646No Hit
GCATCTCTGAGCCTAT44520.13479435232252304No Hit
GGCTTGCGAGTACGTT44420.13449157974318227No Hit
AACCAACACCGGAATG44070.13343187571548945No Hit
ATAGGAAACAGACTTC43630.13209967636638995No Hit
AGCTCGGACCTTAAGC43620.13206939910845586No Hit
GGGTCGTACCGCTCGA43250.13094914056489493No Hit
AACGTCCCTTACAGAA43080.13043442718001555No Hit
CCCAATGCTGGAATGC42960.1300711000848066No Hit
GGTAGCCTGTGCCACG42490.12864806896190484No Hit
GATACCATGTCTGGAT42440.12849668267223444No Hit
TTGACGTGACCTCAAA42180.12770947396594837No Hit
CTGCCATTGCACAGTT42180.12770947396594837No Hit
TTGTAACCTCATCCTC41720.12631672010098072No Hit
CTGATTACTGCTTTGA41600.12595339300577174No Hit
TGGAGTTACAAGTCTC41590.12592311574783766No Hit
ATAGCCAACATGGCCC41560.12583228397403542No Hit
CCTACGGGATGGAACG40940.12395509398212248No Hit
CGCTTACTGGCCACGT40770.12344038059724313No Hit
TCAGGCTCTTAAAGCA40510.12265317189095706No Hit
CGCTGAGTGTTAGCTG39920.12086681367284637No Hit
TGTTTGTTGCGCTCGA39890.12077598189904411No Hit
GGGATCAGATGAGTAA39740.12032182303003292No Hit
CGATCAAACCGATCGC39440.11941350529201052No Hit
ATCTTACTGCGCACTG39360.11917128722853788No Hit
TGGGTGCACTTCTGAG39170.11859601932779036No Hit
CGCTTCCCTGCGCTGT38430.11635550224066847No Hit
TCCAAAGTGAAGGCCA38070.11526552095504161No Hit
CATGTTACTAACGTGG37870.11465997579636No Hit
TTCTAACACTACGTTG37810.11447831224875554No Hit
CCTCCCTTGTTTCGCC37080.1122680724195677No Hit
AGCCGGTACGCGCAAA37060.11220751790369954No Hit
GCATAGTACGCTCCTT37010.11205613161402914No Hit
CTCGGATCTTTCTGAG36810.11145058645534754No Hit
AACCACTGAAAACATG36300.1099064463007095No Hit
TGAGATAGACTCATCC36010.10902840582062118No Hit
AGTGGTACTCAACGCC35830.10848341517780773No Hit
GTCCTGACTTTACGAC35600.1077870382453239No Hit
AACAGCTACTCGAGAG35580.10772648372945576No Hit
TACAACCGATTCCATT35580.10772648372945576No Hit
ACCTGCTTGCCAAACT35390.10715121582870824No Hit
CTTAGGCCTTATGACC35330.10696955228110376No Hit
CGAGTCTCTTACTTTC35260.1067576114755652No Hit
TACGCCTTGGGTTGAG35210.1066062251858948No Hit
TATCTCCCTGGAATTA35160.1064548388962244No Hit
GTAAGAAACGACAAAT35040.10609151180101543No Hit
CCTTCAGTGTAGCTTG34980.10590984825341096No Hit
ATTGAGAGATGATCAC34840.10548596664233384No Hit
ATCGCAATGTAACTCG34650.10491069874158632No Hit
GCATATCGAGCCGCTA34520.10451709438844328No Hit
GCATGGGCTATGTGGG34390.10412349003530025No Hit
AGAACAATGAGTCGGA34290.10382071745595946No Hit
GTGTACTGAATCACAC34110.10327572681314602No Hit
ACCTCCATGGAATTGA34080.10318489503934379No Hit
TTCACGCTGTGGGCAA34010.10297295423380523No Hit
GAAAGTAACCCTGCGA33950.10279129068620076No Hit
TTCTATGACCAACGCC33900.10263990439653035No Hit
TGGTCCTTGTTTCTGT33700.10203435923784876No Hit
CATGTCAGAACAGGTG33580.1016710321426398No Hit
CCTTCTTTGGATCATC33460.10130770504743083No Hit
GTTGCTAGACGCTCGA33140.10033883279354028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)