FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901075
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA158470.40622136206045767No Hit
CATTCAACTAGGCATG139140.35667091763167846No Hit
GTCGACCGATGCTCAA138280.3544663970828554No Hit
GGGGGGGGGGGGGGGG111940.286946546785181No Hit
ACTGGGCACTTCTCGC111890.28681837698583085No Hit
TGTAAGCTGTTGTGAC108920.2792050909044302No Hit
GCTTTAGGAACTAGTC84090.21555596854713124No Hit
TAGTTGCGACATAGCT65480.16785116922899457No Hit
CATCAGTGATTCGCAA61150.15675166460526907No Hit
CAGGAGCCTCGTGCAC51780.13273264420704547No Hit
CAGGAGCCTTCCAATG47370.1214280679043597No Hit
TCCTTAAACAGGGAGG42120.10797023897259089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)