FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4272603
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC415169797.17020280143042No Hit
GGGCCTAC260980.610822021142615No Hit
GGGACTAA118760.2779570205797262No Hit
GGGACAAC100560.235360036961075No Hit
GGGAATAC68730.16086212550054382No Hit
GGGACTCC68400.16008976261075508No Hit
CGGACTAC66650.15599389880126938No Hit
GCGACTAC60860.1424424408258853No Hit
GGCACTAC57660.13495286128854003No Hit
TGGACTAC46080.10784994533777185No Hit
GGGACTTC45820.10724141700036253No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)