FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004948662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3946333
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC382690296.97362082723379No Hit
AGGCTACA220330.5583157832853943No Hit
AGGCTCCC167270.42386184845526215No Hit
AGGCAACC109370.2771433632184613No Hit
CGGCTACC96330.24410002906495726No Hit
ACGCTACC68590.173806924048224No Hit
AGGATACC52150.13214799663383703No Hit
AGTCTACC48840.12376046319456568No Hit
AGCCTACC48830.12373512321438662No Hit
AGGCTAAC45930.11638652896245705No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)