FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004948665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004948665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3602807
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT603561.6752493264279769No Hit
AAATAGGTGTTGCGTA306320.8502259488226818No Hit
GGCTTGCGACGACATT292280.811256334297119No Hit
TATCACTACTGGTCCG265750.7376193062797979No Hit
ATGGGTTACCATGCGC261350.725406606570932No Hit
GTGTTGTGAGGGTAGT175270.48648179044839207No Hit
CTAATCTTGCCACTTC169030.469161961770364No Hit
CTGCTTTCTCCACTTC155660.43205200833683294No Hit
AGAGAATTGCCTCCTA142130.3944979567320703No Hit
AGCCGAGCTGCCCTTT109530.30401295434365483No Hit
CTGGCCAGAGGAATGC108480.3010985600949482No Hit
AATGGTGCTTCGTACA102640.2848889768449989No Hit
GGGGGGGGGGGGGGGG95350.2646547539182643No Hit
TCCCTGTGACCCGCAA84750.23523325007417825No Hit
GCTCCTAACCTATCTT81180.22532430962857575No Hit
GAGAGAAGACTCACGG77530.21519332009735742No Hit
TGCCGTTACAATCTGC74420.2065611618940454No Hit
TTGTCAACTAATACAG72290.20064910498952623No Hit
CTTAATCTGGGAATTA71250.19776246687652155No Hit
TCTTTCCACCGAGTGA70170.19476480422070902No Hit
GCTGTTCTGATAGGTA69790.19371007106403423No Hit
TCGTATACTTTCTGGA68090.18899152799469968No Hit
GTAATCGTGATCCTCC67700.18790903870232295No Hit
GGGATGTGAAGGTGCA65290.18121980999814868No Hit
TAGCGCGACAAGACAT65280.1811920538624467No Hit
AGTCCTGCTCCTAGTA60890.16900711028928278No Hit
TGCAATGACACCTTGA55370.15368572338179648No Hit
GTTGTTGGATTCCATT53750.14918922939807766No Hit
TGTCAATCTGGTGTCC53490.1484675698698265No Hit
TTGCGTCACCACTCAA53170.14757937352736353No Hit
GCAAATCTGGAATTGA53080.14732956830604582No Hit
CCTTTCTACTCGGGCT49760.13811453125299245No Hit
TACGCCTTGCTGATCA48650.13503360019007402No Hit
TACAACCGATCGCTAA48550.13475603883305434No Hit
TTGTTTGTGGCGCTGT48510.13464501429024647No Hit
GGTTGAACTTCTTTGT47980.13317393909804215No Hit
CAAGTGGGATAGCGAG47430.13164735163443395No Hit
AGAACGCGAGGAGTCA44850.12448626862332621No Hit
TAAGGGCGATTTCTTG44790.12431973180911439No Hit
AATCCAGACTACCAAC44550.12365358455226716No Hit
CCCACCTCTCATGATC44390.12320948638103568No Hit
GAGGTGCCTTCGTACA43980.122071484817255No Hit
CTGCCATTGTCTTTGT42890.11904606602574049No Hit
CCTTTCTACTCATTTC42740.11862972399021096No Hit
TTCCACTCTCGAATCT42420.11774152764774798No Hit
TCTTTCCACTTCGCAA41580.11541001224878268No Hit
GTGGTAACTTTTCCGC41160.11424425454930004No Hit
GAGAGGTTGATGTGGG40810.11327278979973116No Hit
CGGAATTTGAGAGGCT39850.11060820077234224No Hit
GCTCCTAACGAATAGT39710.11021961487251468No Hit
AGCACATTGCTGGAAG38760.10758278198082774No Hit
CGTTTGCTGGCTAATC37320.10358589843974435No Hit
CCAGCTTTGGGAATGC36790.10211482324754004No Hit
TATTGCTTGTTCGTTT36410.10106009009086525No Hit
CTAATCACTGCTCAGC36260.10064374805533575No Hit
GTACTCAGATGAACAA36130.10028291829121015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)